BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB036H08SP1|AL430309
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig321 963 0.0
3x_Contig1685 589 e-168
>3x_Contig321
Length = 1151
Score = 963 bits (481), Expect = 0.0
Identities = 511/525 (97%), Gaps = 1/525 (0%)
Strand = Plus / Minus
Query: 1 atcgtgtccccattragctcgttggtaataaggcagacttacaagatgaacgtgataatt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 526 atcgtgtccccattgtgctcgttggtaataaggcagacttacaagatgaacgtg-taatt 468
Query: 61 tcagtagaagagggaatcgaagtcagtagtaaatggggcaaagtaccattttacgaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcagtagaagagggaatcgaagtcagtagtaaatggggcaaagtaccattttacgaagct 408
Query: 121 agtgcactactcagaagtaatgtcgatgaagtatttattgatcttgtaagacaaattatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agtgcactactcagaagtaatgtcgatgaagtatttattgatcttgtaagacaaattatc 348
Query: 181 agaaacgagttagaatctgcatctaacaccaataacagtcaatctagaaaatttagccaa 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 347 agaaacgagttagaatctgcatctaacatcaataacagtcaatctagaaaatttagccaa 288
Query: 241 gctcgtacgatgggaagtagttcaatgacagarctgggaaacgacgattcavacccttct 300
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 287 gctcgtacgatgggaagtagttcaatgacagaactgggaaacgacgattcaaacccttct 228
Query: 301 caagaacgaaataatgacattgcgggtccaagtcaagttcaacgattagtttcaagagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 caagaacgaaataatgacattgcgggtccaagtcaagttcaacgattagtttcaagagtc 168
Query: 361 caaaccaagaaggatattagctcaaaaccagcagctgattcaaataaacatgctaagarg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 167 caaaccaagaaggatattagctcaaaaccagcagctgattcaaataaacatgctaagaag 108
Query: 421 aaacggaaaaagagtaaganacggtcttgtgtaatattatnacgttgtgtttttcgttct 480
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 107 aaacggaaaaagagtaagaaacggtcttgtgtaatattataacgttgtgtttttcgttct 48
Query: 481 gtaattttccttcatgatagtttgttaamataatactaaartvaa 525
||||||||| ||||| |||||||||||| ||||||||||| | ||
Sbjct: 47 gtaattttcgttcataatagtttgttaaaataatactaaaataaa 3
>3x_Contig1685
Length = 14400
Score = 589 bits (294), Expect = e-168
Identities = 305/310 (98%)
Strand = Plus / Plus
Query: 586 acttatatacctatcaggatatacctaccaggatatacccaaacagttaacccacgattc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 acttatatacctatcaggatatacctaccaggatatacccaaacagttaacccacgattc 62
Query: 646 aattgagtacaaccatctcaatattctgcataacatctcgaggcaacattctcaaaaaaa 705
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 63 aattgagtacaaccatctcaatattctgcataacatctcgaggaaaaattctcaaaaaaa 122
Query: 706 agaagagmtgcacagattgaaaaataaaaattaaagttgactgagatgagatgcgatgag 765
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 agaagagctgcacagattgaaaaataaaaattaaagttgactgagatgagatgcgatgag 182
Query: 766 atgagatgagatgtgtcgctgttcatgcaatacmgaagagagaaacaagtactgcaccca 825
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 183 atgagatgagatgtgtcgctgttcatgcaataccgaagagagaaacaagtactgcaccca 242
Query: 826 tccatatagcaacatctcaaacaaatggsaaacacattagtaaagcagttagctggtcat 885
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 243 tccatatagcaacatctcaaacaaatggaaaacacattagtaaagcagttagctggtcat 302
Query: 886 aggaaggaga 895
||||||||||
Sbjct: 303 aggaaggaga 312
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7597
Number of Sequences: 1807
Number of extensions: 7597
Number of successful extensions: 563
Number of sequences better than 1.0e-20: 2
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)